Cerebellum
Neuroscience Research

Cerebellum

Two decades of research, perseverance, and the pursuit of understanding the brain's most neuron-dense region

Neuroscience brain imaging
21 Years of Research
2,000+ Purkinje Cells Recorded
12 TB Raw Data
80% Brain's Neurons in Cerebellum
2003 Research Began
$1.2M First R01 Grant
~400 Citations (2007 Paper)
$1.9M 2020 R01 Grant
2003 — THE BEGINNING

Where It All Started

I started doing cerebellar research in 2003. That year I had just received my PhD and was doing a postdoc at a medical center in Boston. My advisor, Dr. Harrison, asked me to take on a project no one else wanted to do — using electrophysiology to record the firing patterns of cerebellar Purkinje cells. At that time, everyone was working on the hippocampus and prefrontal cortex; the cerebellum was considered to only control movement, and few people paid attention to it.

Our lab only had three people back then. Me, a technician Jenny, and another postdoc Mike. The equipment was old — the electrophysiology recorder was a product from the 1990s, and the data acquisition card frequently crashed. I arrived at the lab at 7 AM every day and left at 11 PM. For the first six months, we didn't publish anything.

Laboratory microscope

In 2005, I received my first R01 grant — a total of 1.2 million dollars, distributed over five years. This funding allowed me to establish my own lab at Johns Hopkins. I recruited two graduate students, bought new equipment, and began systematically studying the role of the cerebellum in motor learning.

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2005–2014 — GROWTH YEARS

Building the Lab

During those years, we published several papers. In 2007, we published an article on cerebellar long-term depression in the Journal of Neuroscience, which has been cited approximately 400 times. In 2009, we discovered a new cerebellar circuit connecting the dentate nucleus to the motor cortex, published in Neuron.

2007
Journal of Neuroscience Publication
Published landmark paper on cerebellar long-term depression. Approximately 400 citations to date.
2009
Neuron Publication — New Circuit Discovery
Discovered a new cerebellar circuit connecting the dentate nucleus and motor cortex.
2010–2014
Peak Lab Size
8 graduate students, 3 postdocs, 2 technicians. Publishing 4–5 papers per year. NIH funding stable with three R01s running simultaneously.
Lab at Peak Capacity (2010–2014) Maximum Scale
Graduate Students 8
Postdoctoral Researchers 3
Technicians 2
Annual Publications 4–5 papers
Active R01 Grants 3
Neural imaging
Microscope laboratory
Research data
Brain scan
Scientific research
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2015 — CRISIS BEGINS

When Things Started to Fall Apart

Problems started in 2015.

NIH funding rates dropped from 30% to 10%. One of my R01s didn't get renewed. A postdoc got his own faculty position and left, taking the entire project he was responsible for with him. I started laying people off. First a technician, then a graduate student transferred to another lab.

⚠️ Equipment Failure — 2017
In 2017, our two-photon microscope broke down. We had paid $350,000 for it in 2011. The repair company said the laser needed to be replaced, quoting $180,000. I didn't have that money. I applied for an equipment grant — rejected. I talked to several companies about collaboration; they weren't interested in cerebellar research. One company said they could fund us on the condition that we do drug testing they specified. I refused. That microscope sat idle for two years.

We could only use the old single-photon confocal for experiments, with much lower data quality. Several submissions were criticized by reviewers for insufficient imaging resolution; I couldn't explain why. In 2019, I almost shut down the lab. I sat in my office doing the math — without new funding, we could only survive until June 2020. I started contacting other labs for my graduate students.

My wife said I couldn't just give up like this. I had been in this field for 16 years. The students needed to finish their dissertations.

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2020 — RENEWAL

A New Beginning

In February 2020, we received a new R01 to study the role of the cerebellum in autism. The reviewers gave very high scores. The funding was 1.9 million dollars, distributed over four years.

This required me to make some decisions.

01
Narrow the Research Focus
Previously we did everything — motor learning, eye movement control, ataxia, development. Now focusing only on two directions: autism-related cerebellar function, and cerebellar-cortical connectivity. All other directions stopped completely.
02
No More Graduate Students
Training a graduate student takes 5–6 years, and I'm not sure the lab can last that long. Now only recruiting postdocs — they can work immediately upon arrival, publish papers in 2–3 years, then leave.
03
Fix the Microscope
Used part of the new funding plus a small equipment grant, scraped together $200,000. In March 2021, the microscope was repaired.

Our lab is very small now. 2 postdocs, 1 technician, and I often do experiments myself. This is about the same as when I first started in 2005.

Modern laboratory
Current Research Discovery
Cerebellar Gray Matter Volume Reduction in Autism

We collaborated with clinicians and recruited 47 autism patients for brain imaging. We found that their cerebellar gray matter volume was 8% to 12% smaller than normal, primarily concentrated in cerebellar posterior lobe lobules VI and VII. This finding is currently being written into a paper.

47 Patients Recruited
8–12% Volume Reduction
VI & VII Affected Lobules
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THE FUTURE

What Remains to Be Done

I don't know how long the lab can continue. The R01 will end in 2024, and I'll be 60 then. If it doesn't get renewed, I'll probably retire.

There are still a few things I want to do.

Three Things I Want to Complete
Before the lab potentially closes
📚
Write a Textbook on the Cerebellum
Current textbooks on the market are from the 1990s with outdated content. I've written three draft chapters, managing about 2,000 words per week.
💾
Archive 18 Years of Data
We've recorded the activity of over 2,000 Purkinje cells — 12TB of raw data. This shouldn't disappear when the lab closes. My technician is doing data annotation; progress is slow, completion will take about two years.
🔬
Train a Successor
My postdoc Sarah is interested in this field. I'm helping her apply for a K99. If she can get it and find a faculty position, this research can continue.
Lab Comparison 2005 (Start) 2010–2014 (Peak) Present Graduate Students 2 8 0 Postdocs 0 3 2 Technicians — 2 1 PI Does Experiments Yes Rarely Often

The cerebellum contains 80% of the brain's total neurons.
After all these years, we still understand very little.

This is the work I do.

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